Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sigE_2RNA polymerase sigma-35 factor precursor. (182 aa)    
Predicted Functional Partners:
flhB_1
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
  
 0.891
AQR97029.1
Anti-sigma-28 factor, FlgM.
  
 
 0.854
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.816
pomA_1
Chemotaxis protein PomA.
 
  
 0.810
spoIIAB_1
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
 
 0.806
fliN
Flagellar motor switch protein FliN.
 
  
 0.795
flgK
Flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
 
  
 0.788
AQR95531.1
DNA polymerase III subunit beta.
       0.785
fliM
Flagellar motor switch protein FliM.
 
 
 0.783
AQR95528.1
Hypothetical protein.
       0.782
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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