STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_4Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (335 aa)    
Predicted Functional Partners:
AQR95539.1
Hypothetical protein.
       0.580
soj
Sporulation initiation inhibitor protein Soj.
 
   
 0.571
AQR95540.1
Hypothetical protein.
       0.568
AQR95541.1
Hypothetical protein.
       0.568
AQR95542.1
RNA polymerase sigma factor.
       0.568
tagH
Teichoic acids export ATP-binding protein TagH.
  
    0.520
AQR95537.1
Hypothetical protein.
       0.506
AQR95543.1
Hypothetical protein.
 
   
 0.482
spoIIIE
DNA translocase SpoIIIE.
 
   
 0.453
cobB_1
Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
      
 0.453
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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