Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95548.1Phage terminase large subunit. (439 aa)    
Predicted Functional Partners:
AQR95547.1
Terminase small subunit.
  
  
 0.945
AQR95546.1
Hypothetical protein.
       0.727
xkdK
Phage tail sheath protein.
 
  
 0.689
AQR93519.1
Hypothetical protein.
 
  
 0.686
AQR95571.1
Bacterial SH3 domain protein.
 
  
 0.683
AQR93500.1
Hypothetical protein.
 
  
 0.668
AQR93503.1
Hypothetical protein.
 
  
 0.668
AQR95566.1
Phage tail sheath protein.
 
  
 0.665
AQR93495.1
Phage tail sheath protein.
 
  
 0.661
AQR93513.1
Phage XkdN-like protein.
 
  
 0.653
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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