Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xkdM_3Phage-like element PBSX protein XkdM. (137 aa)    
Predicted Functional Partners:
AQR95566.1
Phage tail sheath protein.
 
 
   0.964
AQR95571.1
Bacterial SH3 domain protein.
 
 
   0.889
AQR95574.1
Hypothetical protein.
 
 
   0.889
AQR93495.1
Phage tail sheath protein.
 
 
   0.887
AQR95576.1
Hypothetical protein.
 
 
   0.887
AQR98116.1
Phage tail sheath protein.
 
 
   0.886
AQR95575.1
Baseplate J-like protein.
 
 
   0.885
AQR93503.1
Hypothetical protein.
 
 
   0.869
AQR93500.1
Hypothetical protein.
 
 
   0.863
AQR98107.1
Hypothetical protein.
 
 
   0.862
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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