Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95568.1Phage XkdN-like protein. (145 aa)    
Predicted Functional Partners:
AQR95566.1
Phage tail sheath protein.
  
  
 0.711
AQR95547.1
Terminase small subunit.
  
  
 0.693
AQR95571.1
Bacterial SH3 domain protein.
  
  
 0.659
AQR95565.1
Hypothetical protein.
       0.602
xkdM_3
Phage-like element PBSX protein XkdM.
       0.594
AQR95564.1
Hypothetical protein.
       0.583
AQR95563.1
Hypothetical protein.
       0.577
xkdM_2
Phage-like element PBSX protein XkdM.
  
  
 0.558
AQR95575.1
Baseplate J-like protein.
  
  
 0.548
AQR95548.1
Phage terminase large subunit.
  
  
 0.544
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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