Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95571.1Bacterial SH3 domain protein. (227 aa)    
Predicted Functional Partners:
AQR95575.1
Baseplate J-like protein.
 
 
 0.986
AQR95574.1
Hypothetical protein.
 
 
 0.985
AQR95576.1
Hypothetical protein.
 
 
 0.978
AQR95566.1
Phage tail sheath protein.
 
 
 0.953
AQR93495.1
Phage tail sheath protein.
 
 
 0.943
AQR98116.1
Phage tail sheath protein.
 
 
 0.941
AQR93504.1
Baseplate J-like protein.
 
 
 0.932
AQR98106.1
Baseplate J-like protein.
 
 
 0.932
xkdK
Phage tail sheath protein.
 
 
 0.931
AQR93503.1
Hypothetical protein.
 
 
 0.929
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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