Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95575.1Baseplate J-like protein. (376 aa)    
Predicted Functional Partners:
AQR95571.1
Bacterial SH3 domain protein.
 
 
 0.986
AQR95574.1
Hypothetical protein.
 
 
 0.983
AQR95576.1
Hypothetical protein.
 
 
 0.976
AQR95566.1
Phage tail sheath protein.
 
 
 0.946
AQR93495.1
Phage tail sheath protein.
 
 
 0.935
AQR93500.1
Hypothetical protein.
 
 
 0.934
AQR98116.1
Phage tail sheath protein.
 
 
 0.934
xkdK
Phage tail sheath protein.
 
 
 0.933
AQR93516.1
LysM domain/BON superfamily protein.
 
 
 0.932
AQR93503.1
Hypothetical protein.
 
 
 0.929
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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