Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95595.1Tetratricopeptide repeat protein. (407 aa)    
Predicted Functional Partners:
AQR95344.1
Helix-turn-helix domain protein.
  
   
 0.863
AQR95596.1
Hypothetical protein.
     
 0.831
AQR98202.1
Restriction endonuclease.
  
     0.631
AQR94680.1
Hypothetical protein.
      
 0.630
AQR95343.1
Hypothetical protein.
      
 0.630
AQR96338.1
Sulfite exporter TauE/SafE.
  
     0.568
chlD
Hypothetical protein.
 
     0.564
AQR96893.1
Hypothetical protein.
  
     0.553
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.498
ycgJ_1
Putative methyltransferase YcgJ.
  
     0.495
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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