Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR95607.1Bacterial Ig-like domain protein. (463 aa)    
Predicted Functional Partners:
AQR93515.1
Hypothetical protein.
 
 
 0.622
AQR97590.1
Amylo-alpha-1,6-glucosidase.
  
  
  0.547
AQR95547.1
Terminase small subunit.
  
  
 0.521
AQR95608.1
Hemolysin XhlA.
       0.519
AQR95609.1
Hypothetical protein.
       0.483
AQR93672.1
Thermophilic serine proteinase precursor.
  
 
 0.466
lyc_4
Autolytic lysozyme.
  
  
 0.429
AQR95548.1
Phage terminase large subunit.
  
  
 0.425
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
    
 0.420
ramA2
Bacterial alpha-L-rhamnosidase.
    
 0.420
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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