Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lyc_4Autolytic lysozyme. (262 aa)    
Predicted Functional Partners:
ykuD
Putative L,D-transpeptidase YkuD.
    
 0.711
bglB-2
Beta-glucosidase BoGH3A precursor.
    
 0.641
bglX_1
Periplasmic beta-glucosidase precursor.
    
 0.641
bglX_2
Periplasmic beta-glucosidase precursor; Belongs to the glycosyl hydrolase 3 family.
    
 0.641
bglB
Thermostable beta-glucosidase B.
    
 0.641
xyl3A
Xylan 1,4-beta-xylosidase precursor.
    
 0.641
bglX_3
Periplasmic beta-glucosidase precursor.
    
 0.641
mepH_3
Murein DD-endopeptidase MepH precursor.
  
 
 0.617
ykfA_1
Putative murein peptide carboxypeptidase.
    
 0.615
mccF
Microcin C7 self-immunity protein MccF.
    
 0.615
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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