STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbmC_3DNA gyrase inhibitor. (151 aa)    
Predicted Functional Partners:
AQR96397.1
Pyridoxamine 5'-phosphate oxidase.
 
     0.531
AQR94951.1
Hypothetical protein.
  
     0.484
miaB_1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
   
    0.469
AQR94744.1
Putative cell wall binding repeat protein.
  
     0.469
AQR93721.1
Hypothetical protein.
  
     0.461
AQR94686.1
Hypothetical protein.
  
     0.442
AQR94703.1
Mor transcription activator family protein.
  
     0.415
AQR94837.1
Mor transcription activator family protein.
  
     0.408
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.