STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95637.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
pdhC
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
    
  0.610
tipA
HTH-type transcriptional activator TipA.
  
     0.547
bsn
Extracellular ribonuclease precursor.
   
  
 0.545
cpdA_1
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
  
     0.501
AQR93279.1
Antibiotic biosynthesis monooxygenase.
  
     0.477
mta_2
HTH-type transcriptional activator mta.
  
     0.458
AQR95365.1
Alpha/beta hydrolase family protein.
  
     0.445
nasF
uroporphyrinogen-III C-methyltransferase.
       0.424
AQR93424.1
NADH oxidase.
  
 
  0.409
fldZ_2
2-enoate reductase FldZ.
  
 
  0.409
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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