STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95656.1Flavodoxin. (162 aa)    
Predicted Functional Partners:
pkn1
Serine/threonine-protein kinase pkn1.
      0.838
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.652
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.652
AQR94524.1
Iron-sulfur flavoprotein.
 
     0.528
yjaB_2
Putative N-acetyltransferase YjaB.
       0.506
grsB
Gramicidin S synthase 2.
   
   0.478
AQR96122.1
Hypothetical protein.
  
  
 0.440
nrdB
Ribonucleoside-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
    0.432
AQR96050.1
Threonine and homoserine efflux system.
  
   0.425
AQR97245.1
Putative esterase.
  
    0.417
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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