STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotJBCotJB protein. (83 aa)    
Predicted Functional Partners:
AQR95659.1
Manganese containing catalase.
 
  
 0.975
cotJA
Spore coat associated protein CotJA.
     
 0.928
cotJC
Hypothetical protein.
  
  
 0.883
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.859
ydbD
Putative manganese catalase.
 
  
 0.776
cooS2
Carbon monoxide dehydrogenase 2.
      
 0.691
cooS1
Carbon monoxide dehydrogenase 1.
      
 0.691
cotS
Spore coat protein S.
   
  
 0.689
spoIIID
Stage III sporulation protein D.
 
  
 0.672
spoIIE
Stage II sporulation protein E.
  
     0.661
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.