Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95678.1Hypothetical protein. (202 aa)    
Predicted Functional Partners:
hisK_2
Histidinol-phosphatase; Belongs to the PHP hydrolase family. HisK subfamily.
       0.727
rpfG_13
Cyclic di-GMP phosphodiesterase response regulator RpfG.
       0.571
prtP
PIII-type proteinase precursor; Belongs to the peptidase S8 family.
 
     0.498
rpoE
ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.488
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
     0.488
lytA_16
Autolysin.
  
     0.462
AQR95675.1
HD domain protein.
       0.455
AQR95676.1
Glyoxalase-like domain protein.
       0.455
AQR96273.1
Putative peptidoglycan binding domain protein.
 
     0.437
epr_1
Minor extracellular protease Epr precursor.
 
     0.421
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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