Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoR_5Alkaline phosphatase synthesis sensor protein PhoR. (790 aa)    
Predicted Functional Partners:
walR_4
Transcriptional regulatory protein WalR.
 
 0.967
walR_5
Transcriptional regulatory protein WalR.
 
 0.858
walR_1
Transcriptional regulatory protein WalR.
 
 0.848
phoP_4
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.802
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.800
walR_2
Transcriptional regulatory protein WalR.
 
 0.772
srrA_7
Transcriptional regulatory protein SrrA.
 
 0.762
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.736
srrA_3
Transcriptional regulatory protein SrrA.
 
 0.723
graR_2
Response regulator protein GraR.
 
 0.696
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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