STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaF_1Putative ribosomal N-acetyltransferase YdaF. (208 aa)    
Predicted Functional Partners:
AQR95901.1
ribosomal-protein-S5-alanine N-acetyltransferase.
  
     0.769
AQR94111.1
Acetyltransferase (GNAT) family protein.
  
     0.713
AQR96982.1
Hypothetical protein.
  
 
 0.710
AQR96048.1
Hypothetical protein.
  
     0.666
guaA3
anhydro-N-acetylmuramic acid kinase.
  
     0.664
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.630
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.630
AQR95919.1
Phosphotransferase enzyme family protein.
  
 
 0.581
AQR95658.1
Hypothetical protein.
  
     0.578
pseG
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase.
  
 
 0.560
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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