Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95702.1Hypothetical protein. (166 aa)    
Predicted Functional Partners:
AQR93551.1
Macrolide transporter ATP-binding /permease protein.
  
    0.942
xerD_5
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
    0.669
AQR95701.1
Putative Mg(2+) transport ATPase.
       0.490
AQR93544.1
Hypothetical protein.
   
    0.447
AQR95703.1
Arogenate dehydrogenase.
       0.431
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.431
xerC_1
Tyrosine recombinase XerC.
   
    0.410
xerD_1
Tyrosine recombinase XerD.
   
    0.410
xerD2
Phage integrase family protein.
   
    0.410
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
    0.410
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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