Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yicJ_1Inner membrane symporter YicJ. (457 aa)    
Predicted Functional Partners:
yjmB_1
Putative symporter YjmB.
  
     0.771
ramA2
Bacterial alpha-L-rhamnosidase.
     
 0.481
murR_2
HTH-type transcriptional regulator MurR.
   
    0.475
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
  
 0.470
xylB2
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.456
AQR93537.1
Hypothetical protein.
   
    0.448
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.447
yusV
Putative siderophore transport system ATP-binding protein YusV.
   
    0.446
xylB4
Non-reducing end alpha-L-arabinofuranosidase BoGH43A precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.437
xsa
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.413
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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