STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ramA2Bacterial alpha-L-rhamnosidase. (900 aa)    
Predicted Functional Partners:
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.722
glgC_1
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.709
glgC_2
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.709
rhaB
Rhamnulokinase.
 
  
 0.707
ebgA
Evolved beta-galactosidase subunit alpha.
 
 
 0.700
cbgA_1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.677
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
 
  
  0.674
kduD_1
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
  
 
 0.668
hypBA1_1
Non-reducing end beta-L-arabinofuranosidase.
 
     0.668
acr1_1
Fatty acyl-CoA reductase.
  
 
 0.667
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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