Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ramA2Bacterial alpha-L-rhamnosidase. (900 aa)    
Predicted Functional Partners:
bglX_3
Periplasmic beta-glucosidase precursor.
 
  
 0.941
bglB-2
Beta-glucosidase BoGH3A precursor.
   
 0.926
bglB
Thermostable beta-glucosidase B.
 
  
 0.922
bglX_2
Periplasmic beta-glucosidase precursor; Belongs to the glycosyl hydrolase 3 family.
    
 0.912
xyl3A
Xylan 1,4-beta-xylosidase precursor.
    
 0.912
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
 
  
  0.680
hypBA1_1
Non-reducing end beta-L-arabinofuranosidase.
 
     0.669
rhaB
Rhamnulokinase.
 
   
 0.649
pkn1
Serine/threonine-protein kinase pkn1.
  
   0.645
agaA
Alpha-galactosidase A precursor.
 
  
  0.644
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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