Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pipB2Secreted effector protein pipB2. (214 aa)    
Predicted Functional Partners:
AQR94986.1
Hypothetical protein.
  
     0.748
AQR95054.1
Hypothetical protein.
  
     0.708
mgrA
HTH-type transcriptional regulator MgrA.
  
     0.707
AQR95739.1
Hypothetical protein.
       0.642
yjjK_2
Putative ABC transporter ATP-binding protein YjjK.
 
   
 0.613
AQR96625.1
Peptidase family S41.
  
     0.573
AQR95035.1
Hypothetical protein.
 
     0.557
AQR95099.1
N-glycosyltransferase.
  
  
 0.539
AQR97488.1
Ferredoxin-2.
 
    0.535
agrB_2
Accessory protein regulator protein B.
  
     0.524
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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