Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydjMInner membrane protein YdjM. (190 aa)    
Predicted Functional Partners:
ywnH
Putative phosphinothricin acetyltransferase YwnH.
  
    0.450
AQR95688.1
Hypothetical protein.
  
    0.450
AQR96637.1
Acetyltransferase (GNAT) family protein.
  
    0.450
mreD
Rod shape-determining protein MreD.
   
    0.447
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase.
   
    0.440
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
   
    0.440
hndD_1
NADP-reducing hydrogenase subunit HndC.
       0.419
sfrB_3
NADPH-Fe(3+) oxidoreductase subunit beta.
       0.419
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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