Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ykfA_1Putative murein peptide carboxypeptidase. (303 aa)    
Predicted Functional Partners:
murC_1
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.680
AQR95762.1
L-Ala-D/L-Glu epimerase.
 
    0.676
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
    
 0.670
mepH_3
Murein DD-endopeptidase MepH precursor.
  
 
 0.655
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.624
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
    
 0.623
lyc_3
Autolytic lysozyme.
    
 0.615
lyc_4
Autolytic lysozyme.
    
 0.615
amiA
N-acetylmuramoyl-L-alanine amidase AmiA precursor.
    
 0.560
penA
Penicillin-binding protein 2B.
    
 0.548
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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