Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR95762.1L-Ala-D/L-Glu epimerase. (359 aa)    
Predicted Functional Partners:
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.772
hcr
NADH oxidoreductase hcr.
  
 
 0.699
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 
 0.696
ykfA_1
Putative murein peptide carboxypeptidase.
 
    0.676
lcfB_1
long-chain-fatty-acid--CoA ligase.
  
 
 0.653
dltA_1
D-alanine--poly(phosphoribitol) ligase subunit 1.
  
 
 0.653
lcfB_2
long-chain-fatty-acid--CoA ligase.
  
 
 0.653
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
  
 
 0.652
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.648
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.648
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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