STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95762.1L-Ala-D/L-Glu epimerase. (359 aa)    
Predicted Functional Partners:
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.798
hcr
NADH oxidoreductase hcr.
  
 
 0.742
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 
 0.715
lcfB_1
long-chain-fatty-acid--CoA ligase.
  
 
 0.713
dltA_1
D-alanine--poly(phosphoribitol) ligase subunit 1.
  
 
 0.713
lcfB_2
long-chain-fatty-acid--CoA ligase.
  
 
 0.713
ykfA_1
Putative murein peptide carboxypeptidase.
 
  
 0.688
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
  
 
 0.687
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.667
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.667
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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