Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hydAPeriplasmic hydrogenase large subunit. (449 aa)    
Predicted Functional Partners:
hndC_2
NADP-reducing hydrogenase subunit HndC.
 
 
 0.967
hndC_3
NADP-reducing hydrogenase subunit HndC.
 
 
 0.964
hndC_1
NADP-reducing hydrogenase subunit HndC.
 
 
 0.955
hndA
NADP-reducing hydrogenase subunit HndA.
 
 0.831
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
 0.740
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
 0.740
der_2
GTPase Der.
 
   
 0.708
bioB_1
Biotin synthase.
 
  
 0.705
hndD_2
NADP-reducing hydrogenase subunit HndC.
 
 
0.682
AQR95507.1
Ferredoxin, 2Fe-2S.
   
 0.625
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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