STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpBeta-lactam-inducible penicillin-binding protein. (677 aa)    
Predicted Functional Partners:
rodA
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.866
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 0.856
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 0.848
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.809
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
 
 0.753
gloA_2
Lactoylglutathione lyase.
     
 0.728
ftsL_2
Cell division protein FtsL.
  
 
 0.709
cphA
Cyanophycin synthetase; Belongs to the MurCDEF family.
  
 
 0.708
divIB
Cell division protein DivIB; Essential cell division protein.
  
 
 0.707
murG
UDP-N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
 
 0.664
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.