STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
corA_1Magnesium transport protein CorA. (306 aa)    
Predicted Functional Partners:
rsbV
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
    0.650
AQR93624.1
TspO/MBR family protein.
  
    0.477
comFB
Late competence development protein ComFB.
       0.470
yigZ
IMPACT family member YigZ.
  
    0.466
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
   
    0.414
AQR97679.1
CYTH domain protein.
   
    0.412
AQR96837.1
Hypothetical protein.
   
    0.408
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.