STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS cluster assembly protein SufB. (469 aa)    
Predicted Functional Partners:
sufC
Vegetative protein 296.
 0.999
sufU
Zinc-dependent sulfurtransferase SufU.
 
 
 0.990
sufS_1
Cysteine desulfurase SufS; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.989
sufD
FeS cluster assembly protein SufD.
 
 
0.986
sufS_2
Cysteine desulfurase SufS.
 
 0.948
csd
Putative cysteine desulfurase.
 
 0.872
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
 
 0.857
AQR94675.1
Hypothetical protein.
  
 
 0.748
AQR97735.1
Hypothetical protein.
  
 
 0.665
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
    0.598
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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