STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgl_2Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (506 aa)    
Predicted Functional Partners:
rhgT
Rhamnogalacturonan acetylesterase RhgT.
 0.986
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
  
 0.972
pemA_2
Pectinesterase A precursor.
 
  
 0.925
pemA_1
Pectinesterase A precursor.
 
  
 0.924
inhA
Isonitrile hydratase.
   
    0.744
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.738
AQR93489.1
Hypothetical protein.
  
 
 0.720
AQR93488.1
Phage tail protein.
  
   0.704
AQR97306.1
Hypothetical protein.
 
 
 0.674
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
 
  
 0.667
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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