Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yteRUnsaturated rhamnogalacturonyl hydrolase YteR. (361 aa)    
Predicted Functional Partners:
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
 0.973
pemA_1
Pectinesterase A precursor.
 
  
 0.853
pemA_2
Pectinesterase A precursor.
 
  
 0.852
rhgT
Rhamnogalacturonan acetylesterase RhgT.
 
 
 0.824
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.808
uxaB
Altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
  
 0.778
uxaA
Altronate dehydratase.
 
   
 0.709
AQR93581.1
Xylose isomerase-like TIM barrel.
 
    0.701
AQR97380.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
   
 0.694
nfo_3
Endonuclease 4.
 
    0.654
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.