STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaBAltronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily. (482 aa)    
Predicted Functional Partners:
uxaA
Altronate dehydratase.
 
 0.999
uxaC_2
Uronate isomerase.
 
 
 0.990
uxaC_3
Uronate isomerase.
 
 
 0.987
uxaC_4
Uronate isomerase.
 
 
 0.987
uxaC_1
Uronate isomerase.
 
 
 0.982
mtlA
PTS system mannitol-specific EIICBA component.
 
  
 0.849
mtlF
Mannitol-specific phosphotransferase enzyme IIA component.
  
  
 0.799
licR_3
Putative licABCH operon regulator.
  
  
 0.783
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
 
    0.781
uxuA_2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.673
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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