STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95814.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
AQR95815.1
Putative two-component membrane permease complex subunit.
 
  
 0.955
AQR95816.1
CobW/HypB/UreG, nucleotide-binding domain.
 
     0.784
yjiA_2
Putative GTP-binding protein YjiA.
 
     0.659
AQR92871.1
Hypothetical protein.
  
     0.623
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.589
AQR95756.1
Hypothetical protein.
  
     0.587
AQR93772.1
Hypothetical protein.
  
     0.585
AQR96828.1
Bacterial dynamin-like protein.
 
     0.556
lspA
Lipoprotein signal peptidase.
  
     0.542
AQR94020.1
Putative amidase domain protein.
  
     0.527
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.