Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
macB_4Macrolide export ATP-binding/permease protein MacB. (485 aa)    
Predicted Functional Partners:
macB_5
Macrolide export ATP-binding/permease protein MacB.
 0.996
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 0.991
mdtN_2
Multidrug resistance protein MdtN.
 
 
 0.982
mdtN_3
Multidrug resistance protein MdtN; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.911
macA
Macrolide export protein MacA.
 
 
 0.905
AQR96886.1
Putative efflux pump membrane fusion protein.
 
 
 0.905
AQR95829.1
Hypothetical protein.
  
 0.902
AQR96065.1
Putative ABC transporter ATP-binding protein.
 0.900
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
0.899
mdtA_2
Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.897
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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