STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtN_2Multidrug resistance protein MdtN. (473 aa)    
Predicted Functional Partners:
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.983
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
 0.954
AQR95829.1
Hypothetical protein.
  
 0.940
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.906
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 0.845
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
 0.813
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 0.775
emrK_5
Putative multidrug resistance protein EmrK.
  
     0.749
emrK_1
Putative multidrug resistance protein EmrK.
  
     0.741
emrK_3
Putative multidrug resistance protein EmrK.
  
     0.723
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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