STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoP_5Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. (233 aa)    
Predicted Functional Partners:
yycG_4
Sensor histidine kinase YycG.
 0.881
yycG_2
Sensor histidine kinase YycG.
 
 0.873
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.864
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.851
phoR_12
Alkaline phosphatase synthesis sensor protein PhoR.
  
 0.845
phoR_7
Alkaline phosphatase synthesis sensor protein PhoR.
 0.842
phoR_8
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.840
tcrY
Putative sensor histidine kinase TcrY.
 
 0.838
todS_1
Sensor histidine kinase TodS.
 0.823
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 0.816
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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