Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95836.1Small, acid-soluble spore protein, alpha/beta type. (71 aa)    
Predicted Functional Partners:
ssbB
Single-stranded DNA-binding protein B.
  
     0.753
sspC2_1
Small, acid-soluble spore protein C2.
  
   
 0.741
cotS
Spore coat protein S.
  
     0.705
AQR93304.1
LysM domain protein.
  
     0.674
cotI_2
Spore coat protein I.
  
     0.657
ytxC
YtxC-like family protein.
  
    0.652
cotI_1
Spore coat protein I.
  
     0.650
AQR93724.1
NMT1/THI5 like protein.
  
     0.638
AQR93735.1
Hypothetical protein.
  
     0.633
desVI_1
dTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose.
       0.630
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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