Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95841.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
AQR95842.1
Hypothetical protein.
       0.697
AQR96982.1
Hypothetical protein.
  
 
 0.667
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.576
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.576
cmk_2
Cytidylate kinase.
       0.561
AQR95913.1
Hypothetical protein.
 
    0.502
AQR95844.1
N-acetylglutamate synthase.
 
 
 0.498
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.477
AQR95912.1
Phosphotransferase enzyme family protein.
 
     0.456
hcr
NADH oxidoreductase hcr.
     
  0.436
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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