STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytB_3Putative endo-beta-N-acetylglucosaminidase precursor. (604 aa)    
Predicted Functional Partners:
AQR95592.1
Putative cell wall binding repeat protein.
  
     0.770
lytA_9
Autolysin.
  
     0.766
AQR97800.1
Choline/ethanolamine kinase.
  
     0.737
spsI_2
Bifunctional IPC transferase and DIPP synthase.
  
    0.642
licD
LicD family protein.
  
     0.634
spsI_1
Bifunctional IPC transferase and DIPP synthase.
  
     0.617
mccF
Microcin C7 self-immunity protein MccF.
 
  
  0.572
lspA
Lipoprotein signal peptidase.
  
     0.530
AQR93772.1
Hypothetical protein.
  
     0.492
AQR97795.1
EamA-like transporter family protein.
  
     0.485
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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