STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ermCrRNA adenine N-6-methyltransferase. (260 aa)    
Predicted Functional Partners:
ispA
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.778
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.738
AQR95895.1
Hypothetical protein.
       0.678
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
 
  
 0.649
grsB
Gramicidin S synthase 2.
 
  
 0.645
oppA
Oligopeptide-binding protein OppA precursor.
     
 0.642
licC_4
Lichenan permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
      
 0.630
dtpT
Di-/tripeptide transporter.
      
 0.630
def_2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
     
 0.627
AQR95897.1
Xylose isomerase-like TIM barrel.
 
     0.606
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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