STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95897.1Xylose isomerase-like TIM barrel. (260 aa)    
Predicted Functional Partners:
ulaF_1
L-ribulose-5-phosphate 4-epimerase UlaF.
  
 
 0.932
ulaF_2
L-ribulose-5-phosphate 4-epimerase UlaF.
  
 
 0.932
AQR93581.1
Xylose isomerase-like TIM barrel.
     
  0.900
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
     
  0.900
AQR95896.1
HD domain protein.
       0.746
glpK_2
Glycerol kinase; Belongs to the FGGY kinase family.
  
 
 0.654
xylB_1
Xylulose kinase.
  
 
 0.654
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
  
 
 0.654
ermC
rRNA adenine N-6-methyltransferase.
 
     0.607
AQR95898.1
Hypothetical protein.
       0.572
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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