STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiG_2Ubiquinone biosynthesis O-methyltransferase. (209 aa)    
Predicted Functional Partners:
AQR96087.1
Hypothetical protein; Belongs to the UPF0311 family.
  
 0.670
rmlD_2
dTDP-4-dehydrorhamnose reductase.
  
 
 0.657
AQR95665.1
Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase.
 
     0.533
chlD
Hypothetical protein.
   
 0.523
ywnA_2
Putative HTH-type transcriptional regulator YwnA.
       0.510
cysC
Putative adenylyl-sulfate kinase.
   
 0.500
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.491
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
    0.479
AQR97751.1
Coat F domain protein.
  
    0.466
AQR94792.1
Hypothetical protein.
  
 
 0.457
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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