STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpdA_13',5'-cyclic adenosine monophosphate phosphodiesterase CpdA. (359 aa)    
Predicted Functional Partners:
AQR94332.1
Hypothetical protein.
  
     0.654
AQR96390.1
Ankyrin repeat protein.
   
 0.647
ybiR
Inner membrane protein YbiR.
 
     0.587
AQR95728.1
Methionine gamma-lyase.
  
     0.517
AQR95637.1
Hypothetical protein.
  
     0.501
AQR95919.1
Phosphotransferase enzyme family protein.
       0.486
AQR98066.1
Putative HTH-type transcriptional regulator.
  
   
 0.478
AQR96991.1
Glycosyltransferase sugar-binding region containing DXD motif protein.
  
     0.447
AQR92752.1
Ribosome-associated protein.
  
     0.425
AQR95701.1
Putative Mg(2+) transport ATPase.
 
     0.414
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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