Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR95935.1Bacterial regulatory protein, tetR family. (187 aa)    
Predicted Functional Partners:
AQR95936.1
Hypothetical protein.
 
     0.819
AQR94437.1
Hypothetical protein.
  
     0.615
mtrR_3
HTH-type transcriptional regulator MtrR.
  
     0.536
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.446
AQR94439.1
ABC-2 family transporter protein.
  
     0.436
AQR95854.1
Enterobactin exporter EntS.
  
  
 0.424
AQR94181.1
Bacterial regulatory protein, luxR family.
  
  
 0.415
AQR98068.1
Hypothetical protein.
 
     0.412
AQR95934.1
Hypothetical protein.
       0.406
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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