Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95938.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
AQR97481.1
Hypothetical protein.
  
     0.660
AQR94865.1
Zinc-responsive transcriptional regulator.
 
     0.605
pdxK
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
     
  0.599
rob
Right origin-binding protein.
 
     0.572
ppaX_1
Pyrophosphatase PpaX.
  
     0.568
cfg
Putative AgrB-like protein.
  
     0.556
aadK
Aminoglycoside 6-adenylyltransferase.
 
     0.542
AQR96621.1
Hypothetical protein.
  
     0.539
AQR94326.1
Hypothetical protein.
  
     0.514
nylB
6-aminohexanoate-dimer hydrolase.
  
     0.503
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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