Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR95965.1Putative aminotransferase. (423 aa)    
Predicted Functional Partners:
patA_4
Putative N-acetyl-LL-diaminopimelate aminotransferase.
  
 
 0.782
pheA
P-protein.
  
 
 0.739
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
       0.671
asnO
Asparagine synthetase 3.
  
 
 0.498
AQR93697.1
Putative GTP cyclohydrolase 1 type 2.
   
    0.489
ilvC_2
Ketol-acid reductoisomerase.
    
 0.488
ilvE
Putative branched-chain-amino-acid aminotransferase.
  
 0.467
ilvK
Branched-chain-amino-acid aminotransferase 2.
  
 0.467
dat_1
D-alanine aminotransferase.
  
 0.467
dat_2
D-alanine aminotransferase.
  
 0.467
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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