STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaCpeptidoglycan-N-acetylmuramic acid deacetylase PdaC. (253 aa)    
Predicted Functional Partners:
ssbB
Single-stranded DNA-binding protein B.
  
    0.695
AQR95970.1
Hypothetical protein.
       0.641
arnT
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
 0.526
AQR96062.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
 0.526
AQR96339.1
Hypothetical protein.
  
 
 0.526
xynB_9
Beta-xylosidase.
     
 0.525
arnC_1
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
  
  
 0.480
AQR97052.1
Beta-monoglucosyldiacylglycerol synthase.
  
  
 0.480
pgdA_2
peptidoglycan-N-acetylglucosamine deacetylase.
  
   
0.414
pgdA_4
peptidoglycan-N-acetylglucosamine deacetylase.
  
   
0.412
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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