Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95989.1Membrane protein of unknown function. (125 aa)    
Predicted Functional Partners:
AQR93829.1
Hypothetical protein.
  
  
 0.780
AQR97318.1
Hypothetical protein.
  
  
 0.780
ytxC
YtxC-like family protein.
  
    0.707
AQR97935.1
Hypothetical protein.
 
     0.604
AQR93674.1
Hypothetical protein.
 
     0.559
AQR96089.1
YmaF family protein.
  
     0.553
lrpC_2
HTH-type transcriptional regulator LrpC.
   
    0.547
yyaC
Hypothetical protein.
  
     0.514
sufU
Zinc-dependent sulfurtransferase SufU.
   
    0.501
ykuD
Putative L,D-transpeptidase YkuD.
 
     0.486
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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