STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrA_2HTH-type transcriptional repressor YtrA. (128 aa)    
Predicted Functional Partners:
ytrB_1
ABC transporter ATP-binding protein YtrB.
 
  
 0.921
AQR96009.1
Hypothetical protein.
       0.825
AQR96012.1
Hypothetical protein.
       0.825
AQR93601.1
Hypothetical protein.
  
  
 0.679
cobB_2
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.489
ytrB_2
ABC transporter ATP-binding protein YtrB.
 
  
 0.488
AQR98212.1
Hypothetical protein.
   
    0.451
AQR96013.1
Hypothetical protein.
       0.438
skfE_1
SkfA peptide export ATP-binding protein SkfE.
 
  
 0.425
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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