Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR96027.1Rubrerythrin. (182 aa)    
Predicted Functional Partners:
AQR96028.1
Hypothetical protein.
       0.576
AQR94955.1
Iron hydrogenase 1.
  
  
 0.572
fprA2
Flavo-diiron protein FprA2.
  
  
 0.562
fprA1_1
Flavo-diiron protein FprA1.
  
  
 0.562
rbr_2
Rubrerythrin.
  
  
 0.543
mmgC
acyl-CoA dehydrogenase.
  
 
 0.490
ldh1_1
L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
  
 0.477
kce
3-keto-5-aminohexanoate cleavage enzyme.
     
  0.444
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.439
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.439
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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