STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96027.1Rubrerythrin. (182 aa)    
Predicted Functional Partners:
AQR96028.1
Hypothetical protein.
       0.576
fprA2
Flavo-diiron protein FprA2.
  
  
 0.559
fprA1_1
Flavo-diiron protein FprA1.
  
  
 0.559
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.558
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.558
AQR94955.1
Iron hydrogenase 1.
  
  
 0.544
rbr_2
Rubrerythrin.
  
  
 0.538
mmgC
acyl-CoA dehydrogenase.
  
 
 0.524
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.479
pyrK_2
Dihydroorotate dehydrogenase B, electron transfer subunit.
   
 
 0.479
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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