Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lysN_22-aminoadipate transaminase. (490 aa)    
Predicted Functional Partners:
pheA
P-protein.
  
 
 0.739
AQR93697.1
Putative GTP cyclohydrolase 1 type 2.
   
    0.553
ilvC_2
Ketol-acid reductoisomerase.
    
 0.522
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.503
asnO
Asparagine synthetase 3.
  
 
 0.498
ilvK
Branched-chain-amino-acid aminotransferase 2.
  
 0.473
ilvE
Putative branched-chain-amino-acid aminotransferase.
  
 0.469
dat_1
D-alanine aminotransferase.
  
 0.467
dat_2
D-alanine aminotransferase.
  
 0.467
lysC
Aspartate kinase Ask_LysC; Belongs to the aspartokinase family.
   
 
 0.464
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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